5RLA Hydrolase date May 07, 1997
title Altering The Binuclear Manganese Cluster Of Arginase Diminis Thermostability And Catalytic Function
authors L.R.Scolnick, Z.F.Kanyo, D.W.Christianson
compound source
Molecule: Arginase
Chain: A, B, C
Ec: 3.5.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Cell_line: Bl21
Organ: Liver
Cellular_location: Cytoplasm
Gene: Pargr-2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset C
Expression_system_gene: Parg-X
symmetry Space Group: P 32
R_factor 0.175 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.900 88.900 105.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.74 Å
ligand MN enzyme Hydrolase E.C.3.5.3.1 BRENDA
related structures by homologous chain: 1PQ3, 1R1O
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceAltering the binuclear manganese cluster of arginase diminishes thermostability and catalytic function., Scolnick LR, Kanyo ZF, Cavalli RC, Ash DE, Christianson DW, Biochemistry 1997 Aug 26;36(34):10558-65. PMID:9265637
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (5rla.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 5RLA
  • CSU: Contacts of Structural Units for 5RLA
  • Likely Quarternary Molecular Structure file(s) for 5RLA
  • Retrieve 5RLA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RLA from S2C, [Save to disk]
  • View 5RLA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5RLA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5RLA, from MSDmotif at EBI
  • Genome occurence of 5RLA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5rlaa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d5rlab_, region B [Jmol] [rasmolscript] [script source]
        - Domain d5rlac_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rla_B] [5rla_A] [5rla] [5rla_C]
  • SWISS-PROT database: [P07824]
  • Domain organization of [ARGI1_RAT] by SWISSPFAM
  • Other resources with information on 5RLA
  • Community annotation for 5RLA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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