5SV1 Transport Protein date Aug 04, 2016
title Structure Of The Exbbexbd Complex From E. Coli At Ph 4.5
authors H.Celia, I.Botos, R.Lloubes, S.K.Buchanan, N.Noinaj
compound source
Molecule: Biopolymer Transport Protein Exbb
Chain: A, B, C, D, E, F, G, H, I, J
Engineered: Yes
Organism_scientific: Escherichia Coli Dh1
Organism_taxid: 536056
Gene: Exbb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Biopolymer Transport Protein Exbd
Chain: Y, Z
Fragment: Unp Residues 1-49
Engineered: Yes

Organism_scientific: Escherichia Coli Dh1
Organism_taxid: 536056
Gene: Exbd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.255 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.942 196.748 210.599 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand HG, MLY enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Y, Z


Primary referenceStructural insight into the role of the Ton complex in energy transduction., Celia H, Noinaj N, Zakharov SD, Bordignon E, Botos I, Santamaria M, Barnard TJ, Cramer WA, Lloubes R, Buchanan SK, Nature. 2016 Sep 21. doi: 10.1038/nature19757. PMID:27654919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (729 Kb) [Save to disk]
  • Biological Unit Coordinates (5sv1.pdb1.gz) 358 Kb
  • Biological Unit Coordinates (5sv1.pdb2.gz) 360 Kb
  • LPC: Ligand-Protein Contacts for 5SV1
  • CSU: Contacts of Structural Units for 5SV1
  • Structure Factors (384 Kb)
  • Retrieve 5SV1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5SV1 from S2C, [Save to disk]
  • Re-refined 5sv1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5SV1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5SV1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5sv1_A] [5sv1_H] [5sv1_Z] [5sv1_D] [5sv1_J] [5sv1_B] [5sv1_E] [5sv1] [5sv1_Y] [5sv1_F] [5sv1_C] [5sv1_G] [5sv1_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5SV1
  • Community annotation for 5SV1 at PDBWiki (http://pdbwiki.org)

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