5SY1 Membrane Protein Calcium Binding Protein date Aug 10, 2016
title Structure Of The Stra6 Receptor For Retinol Uptake In Comple Calmodulin
authors O.B.Clarke, Y.Chen, F.Mancia
compound source
Molecule: Calmodulin
Chain: C, D
Organism_scientific: Spodoptera Frugiperda
Organism_common: Fall Armyworm
Organism_taxid: 7108

Molecule: Stra6
Chain: A, B
Synonym: Zgc:136689
Engineered: Yes

Organism_scientific: Danio Rerio
Organism_common: Zebrafish
Organism_taxid: 7955
Gene: Stra6, Zgc:136689
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand CA, CLR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceStructure of the STRA6 receptor for retinol uptake., Chen Y, Clarke OB, Kim J, Stowe S, Kim YK, Assur Z, Cavalier M, Godoy-Ruiz R, von Alpen DC, Manzini C, Blaner WS, Frank J, Quadro L, Weber DJ, Shapiro L, Hendrickson WA, Mancia F, Science. 2016 Aug 26;353(6302). pii: aad8266. doi: 10.1126/science.aad8266. PMID:27563101
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (5sy1.pdb1.gz) 211 Kb
  • LPC: Ligand-Protein Contacts for 5SY1
  • CSU: Contacts of Structural Units for 5SY1
  • Retrieve 5SY1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5SY1 from S2C, [Save to disk]
  • View 5SY1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5SY1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5sy1_B] [5sy1_D] [5sy1] [5sy1_A] [5sy1_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5SY1: [EFh ] by SMART
  • Other resources with information on 5SY1
  • Community annotation for 5SY1 at PDBWiki (http://pdbwiki.org)

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