5SZK	Endocytosis	date	Aug 14, 2016
title	Structure Of Human N-Terminally Engineered Rab1b In Complex Bmerb Domain Of Mical-Cl
authors	A.Rai, A.Oprisko, J.Campos, Y.Fu, T.Friese, A.Itzen, R.S.Goody, E.M M.P.Mueller
compound		source
Molecule: Mical C-Terminal-Like Protein Chain: A Synonym: Erk2-Binding Testicular Protein 1,Ebitein-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Micalcl Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ras-Related Protein Rab-1b Chain: B Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab1b Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.208 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.230 117.030 139.430 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	GNP, MG	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	bMERB domains are bivalent Rab8 family effectors evolved by gene duplication., Rai A, Oprisko A, Campos J, Fu Y, Friese T, Itzen A, Goody RS, Gazdag EM, Muller MP, Elife. 2016 Aug 23;5. pii: e18675. doi: 10.7554/eLife.18675. PMID:27552051

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk] Biological Unit Coordinates (5szk.pdb1.gz) 110 Kb LPC: Ligand-Protein Contacts for 5SZK CSU: Contacts of Structural Units for 5SZK Structure Factors (114 Kb) Retrieve 5SZK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5SZK from S2C, [Save to disk] Re-refined 5szk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5SZK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5SZK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5szk_B] [5szk] [5szk_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5SZK: [DUF3585] [RAB ] by SMART

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