5T04 Signaling Protein date Aug 15, 2016
title Structure Of Constitutively Active Neurotensin Receptor
authors B.Krumm, I.Botos, R.Grisshammer
compound source
Molecule: Neurotensin Receptor Type 1,Endolysin,Neurotensin Type 1;
Chain: A
Fragment: Unp Residues 43-268; 2-161; 297-396,Unp Residues 161; 297-396,Unp Residues 43-268; 2-161; 297-396;
Synonym: Ntr1,High-Affinity Levocabastine-Insensitive Neuro Receptor,Ntrh,Lysis Protein,Lysozyme,Muramidase,Ntr1,High-A Levocabastine-Insensitive Neurotensin Receptor,Ntrh;
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus, Enterobacteria Phag
Organism_common: Rat
Organism_taxid: 10116, 10665
Gene: Ntsr1, Ntsr
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_strain: Cabbage Looper
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1

Molecule: Arg-Arg-Pro-Tyr-Ile-Leu
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Rattus Norvegicus
Organism_taxid: 10116
symmetry Space Group: P 21 21 2
R_factor 0.253 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.190 75.710 83.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand GOL, PEG, TCE enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and dynamics of a constitutively active neurotensin receptor., Krumm BE, Lee S, Bhattacharya S, Botos I, White CF, Du H, Vaidehi N, Grisshammer R, Sci Rep. 2016 Dec 7;6:38564. doi: 10.1038/srep38564. PMID:27924846
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (5t04.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 5T04
  • CSU: Contacts of Structural Units for 5T04
  • Structure Factors (208 Kb)
  • Retrieve 5T04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T04 from S2C, [Save to disk]
  • Re-refined 5t04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5T04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T04
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t04] [5t04_A] [5t04_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5T04
  • Community annotation for 5T04 at PDBWiki (http://pdbwiki.org)

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