5T14	Transferase Dna	date	Aug 17, 2016
title	Dna Polymerase Kappa Extending Beyond A Bulky Major Benzo[A] Adduct
authors	V.K.Jha, H.Ling
compound		source
Molecule: Dna Polymerase Kappa Chain: A, B Synonym: Dinb Protein,Dinp Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polk, Dinb1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Chain: C, P Engineered: Yes		Synthetic: Yes Organism_scientific: Unidentified Organism_taxid: 32644
Molecule: Dna Chain: D, T Engineered: Yes		Synthetic: Yes Organism_scientific: Unidentified Organism_taxid: 32644
symmetry	Space Group: P 21 21 21	R_factor 0.204 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.250 128.820 167.460 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	DZ4, MG, PGE, VKJ	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of accurate replication beyond a bulky major benzo[a]pyrene adduct by human DNA polymerase kappa., Jha V, Ling H, DNA Repair (Amst). 2016 Nov 19. pii: S1568-7864(16)30359-7. doi:, 10.1016/j.dnarep.2016.11.001. PMID:27894903

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk] Biological Unit Coordinates (5t14.pdb1.gz) 81 Kb Biological Unit Coordinates (5t14.pdb2.gz) 80 Kb LPC: Ligand-Protein Contacts for 5T14 CSU: Contacts of Structural Units for 5T14 Structure Factors (1920 Kb) Retrieve 5T14 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5T14 from S2C, [Save to disk] Re-refined 5t14 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5T14 in 3D

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Visual 3D analysis of 5T14

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5t14_P] [5t14_C] [5t14_D] [5t14] [5t14_A] [5t14_B] [5t14_T] SWISS-PROT database: Domain organization of by SWISSPFAM

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