5T18 Transferase date Aug 18, 2016
title Crystal Structure Of Bruton Agammabulinemia Tyrosine Kinase With Bms-986142 Aka (2s)-6-Fluoro-5-[3-(8-Fluoro-1-Methyl-2 1,2,3,4-Tetrahydroquinazolin-3-Yl)-2-Methylphenyl]-2-(2- Hydroxypropan-2-Yl)-2,3,4,9-Tetrahydro-1h-Carbazole-8-Carbo
authors J.K.Muckelbauer
compound source
Molecule: Tyrosine-Protein Kinase Btk
Chain: A
Fragment: Kinase Domain
Synonym: Agammaglobulinemia Tyrosine Kinase,Atk,B-Cell Prog Kinase,Bpk,Bruton Tyrosine Kinase;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Btk, Agmx1, Atk, Bpk
Expression_system: Baculovirus
Expression_system_taxid: 10469
Expression_system_strain: Sf9
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.604 69.759 88.955 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand 73T enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of 6-Fluoro-5-(R)-(3-(S)-(8-fluoro-1-methyl-2,4-dioxo-1,2-dihydroquinazolin-3(4H)-yl )-2-methylphenyl)-2-(S)-(2-hydroxypropan-2-yl)-2,3,4,9-tetrahydro-1H-carbazole-8- carboxamide (BMS-986142): A Reversible Inhibitor of Bruton's Tyrosine Kinase (BTK) Conformationally Constrained by Two Locked Atropisomers., Watterson SH, De Lucca GV, Shi Q, Langevine CM, Liu Q, Batt DG, Beaudoin Bertrand M, Gong H, Dai J, Yip S, Li P, Sun D, Wu DR, Wang C, Zhang Y, Traeger SC, Pattoli MA, Skala S, Cheng L, Obermeier MT, Vickery R, Discenza LN, D'Arienzo CJ, Zhang Y, Heimrich E, Gillooly KM, Taylor TL, Pulicicchio C, McIntyre KW, Galella MA, Tebben AJ, Muckelbauer JK, Chang C, Rampulla R, Mathur A, Salter-Cid L, Barrish JC, Carter PH, Fura A, Burke JR, Tino JA, J Med Chem. 2016 Oct 13;59(19):9173-9200. Epub 2016 Sep 19. PMID:27583770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5t18.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 5T18
  • CSU: Contacts of Structural Units for 5T18
  • Structure Factors (559 Kb)
  • Retrieve 5T18 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T18 from S2C, [Save to disk]
  • Re-refined 5t18 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5T18 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T18
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t18_A] [5t18]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5T18
  • Community annotation for 5T18 at PDBWiki (http://pdbwiki.org)

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