5T1G Transcription date Aug 19, 2016
title Chromo Shadow Domain Of Cbx1 In Complex With A Histone Pepti
authors Y.Liu, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, St Genomics Consortium (Sgc)
compound source
Molecule: Chromobox Protein Homolog 1
Chain: A
Fragment: Unp Residues 108-185
Synonym: Hp1hsbeta,Heterochromatin Protein 1 Homolog Beta,H Heterochromatin Protein P25,M31,Modifier 1 Protein,P25beta;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cbx1, Cbx
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl

Molecule: Histone H3.1
Chain: B
Fragment: Unp Residues 39-53
Synonym: Histone H3a,Histone H3b,Histone H3c
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: F 2 2 2
R_factor 0.213 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.657 76.887 78.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (5t1g.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 5T1G
  • CSU: Contacts of Structural Units for 5T1G
  • Structure Factors (1437 Kb)
  • Retrieve 5T1G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T1G from S2C, [Save to disk]
  • Re-refined 5t1g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5T1G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T1G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t1g_B] [5t1g_A] [5t1g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5T1G: [CHROMO] [ChSh ] by SMART
  • Other resources with information on 5T1G
  • Community annotation for 5T1G at PDBWiki (http://pdbwiki.org)

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