5T3R Transport Protein date Aug 26, 2016
title Crystal Structure Of Bt1762-1763
authors B.Van Den Berg
compound source
Molecule: Susd Homolog
Chain: A
Engineered: Yes
 Organism_scientific: Bacteroides Thetaiotaomicron (Strain A Dsm 2079 Nctc 10582 E50 Vpi-5482);
Organism_taxid: 226186
Expression_system: Bacteroides Thetaiotaomicron (Strain Atc Dsm 2079 Nctc 10582 E50 Vpi-5482);
Expression_system_taxid: 226186

Molecule: Susc Homolog
Chain: D
Engineered: Yes
Organism_scientific: Bacteroides Thetaiotaomicron (Strain A Dsm 2079 Nctc 10582 E50 Vpi-5482);
Organism_taxid: 226186
Expression_system: Bacteroides Thetaiotaomicron (Strain Atc Dsm 2079 Nctc 10582 E50 Vpi-5482);
Expression_system_taxid: 226186
symmetry Space Group: P 21 21 2
R_factor 0.197 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.770 117.330 119.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for nutrient acquisition by dominant members of the human gut microbiota., Glenwright AJ, Pothula KR, Bhamidimarri SP, Chorev DS, Basle A, Firbank SJ, Zheng H, Robinson CV, Winterhalter M, Kleinekathofer U, Bolam DN, van den Berg B, Nature. 2017 Jan 19;541(7637):407-411. doi: 10.1038/nature20828. Epub 2017 Jan, 11. PMID:28077872
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (474 Kb) [Save to disk]
  • Biological Unit Coordinates (5t3r.pdb1.gz) 466 Kb
  • LPC: Ligand-Protein Contacts for 5T3R
  • CSU: Contacts of Structural Units for 5T3R
  • Structure Factors (3350 Kb)
  • Retrieve 5T3R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T3R from S2C, [Save to disk]
  • Re-refined 5t3r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T3R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T3R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t3r_D] [5t3r] [5t3r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T3R
  • Community annotation for 5T3R at PDBWiki (http://pdbwiki.org)

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