5T42 Viral Protein date Aug 28, 2016
title Structure Of The Ebola Virus Envelope Protein Mpertm Domain Interaction With The Fusion Loop Explains Their Fusion Acti
authors J.Lee, D.A.Nyenhuis, E.A.Nelson, D.S.Cafiso, J.M.White, L.K.Tamm
compound source
Molecule: Envelope Glycoprotein
Chain: A
Fragment: Unp Residues 632-676
Synonym: Gp1,2,Gp
Engineered: Yes
 Organism_scientific: Zaire Ebolavirus (Strain Kikwit-95)
Organism_common: Zebov
Organism_taxid: 128951
Strain: Kikwit-95
Gene: Gp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
methodSolution NMR
Primary referenceStructure of the Ebola virus envelope protein MPER/TM domain and its interaction with the fusion loop explains their fusion activity., Lee J, Nyenhuis DA, Nelson EA, Cafiso DS, White JM, Tamm LK, Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):E7987-E7996. doi:, 10.1073/pnas.1708052114. Epub 2017 Sep 5. PMID:28874543
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]
  • Biological Unit Coordinates (5t42.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 5T42
  • Original NMR restraints for 5T42 from PDB
  • Retrieve 5T42 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T42 from S2C, [Save to disk]
    • View 5T42 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T42
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t42_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T42
  • Community annotation for 5T42 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science