5T5W Cytokine Cytokine Receptor date Aug 31, 2016
title Structure Of An Affinity Matured Lambda-Ifnifn-Lambdar1il- Receptor Complex
authors J.L.Mendoza, K.M.Jude, K.C.Garcia
compound source
Molecule: Interleukin-10 Receptor Subunit Beta
Chain: A
Fragment: Unp Residues 20-220
Synonym: Il-10rb,Cytokine Receptor Class-II Member 4,Cytoki Receptor Family 2 Member 4,Crf2-4,Interleukin-10 Receptor S Il-10r2;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il10rb, Crfb4, D21s58, D21s66
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Interferon Lambda Receptor 1
Chain: B
Fragment: Unp Residues 21-230
Synonym: Ifn-Lambda-R1,Cytokine Receptor Class-II Member 12 Receptor Family 2 Member 12,Crf2-12,Interleukin-28 Receptor Alpha,Il-28ra,Likely Interleukin Or Cytokine Receptor 2,Lic
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifnlr1, Il28ra, Licr2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293

Molecule: Interferon Lambda-3
Chain: C
Fragment: Unp Residues 34-195
Synonym: Ifn-Lambda-3,Cytokine Zcyto22,Interleukin-28b,Il-2 Interleukin-28c,Il-28c;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifnl3, Il28b, Il28c, Zcyto22
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 31 2 1
R_factor 0.198 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.790 106.790 129.710 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceThe IFN-lambda-IFN-lambdaR1-IL-10Rbeta Complex Reveals Structural Features Underlying Type III IFN Functional Plasticity., Mendoza JL, Schneider WM, Hoffmann HH, Vercauteren K, Jude KM, Xiong A, Moraga I, Horton TM, Glenn JS, de Jong YP, Rice CM, Garcia KC, Immunity. 2017 Mar 21;46(3):379-392. doi: 10.1016/j.immuni.2017.02.017. PMID:28329704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (5t5w.pdb1.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 5T5W
  • CSU: Contacts of Structural Units for 5T5W
  • Structure Factors (185 Kb)
  • Retrieve 5T5W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T5W from S2C, [Save to disk]
  • Re-refined 5t5w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T5W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T5W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t5w_A] [5t5w_B] [5t5w_C] [5t5w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T5W
  • Community annotation for 5T5W at PDBWiki (http://pdbwiki.org)

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