5T6Q Oxidoreductase date Sep 01, 2016
title Structure Of Cytochrome P450 4b1 (Cyp4b1) Complexed With Oct Alkane And Fatty Acid Omega-Hydroxylase With A Covalently B
authors M.Hsu, E.F.Johnson
compound source
Molecule: Cytochrome P450 4b1
Chain: A
Synonym: Cypivb1,Cytochrome P450 Isozyme 5
Ec: 1.14.14.1
Engineered: Yes
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Cyp4b1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcwori
symmetry Space Group: P 32 2 1
R_factor 0.200 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.678 109.678 125.817 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand HEM, OCT enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Crystal Structure of Cytochrome P450 4B1 (CYP4B1) Monoxygenase Complexed with Octane Discloses Several Structural Adaptations for omega-Hydroxylation., Hsu MH, Baer BR, Rettie AE, Johnson EF, J Biol Chem. 2017 Feb 6. pii: jbc.M117.775494. doi: 10.1074/jbc.M117.775494. PMID:28167536
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5t6q.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 5T6Q
  • CSU: Contacts of Structural Units for 5T6Q
  • Structure Factors (391 Kb)
  • Retrieve 5T6Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T6Q from S2C, [Save to disk]
  • Re-refined 5t6q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T6Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T6Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t6q_A] [5t6q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T6Q
  • Community annotation for 5T6Q at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science