5T77 Transport Protein date Sep 02, 2016
title Crystal Structure Of The Mop Flippase Murj
authors A.C.Y.Kuk, S.Y.Lee
compound source
Molecule: Putative Lipid II Flippase Murj
Chain: A
Engineered: Yes
 Organism_scientific: Thermosipho Africanus (Strain Tcf52b)
Organism_taxid: 484019
Strain: Tcf52b
Gene: Mvin, Tha_1814
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.189 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.163 99.573 74.660 90.00 112.91 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 1PE, CA, CL, NA, OLB, OLC, ZN enzyme
Gene THA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the MOP flippase MurJ in an inward-facing conformation., Kuk AC, Mashalidis EH, Lee SY, Nat Struct Mol Biol. 2016 Dec 26. doi: 10.1038/nsmb.3346. PMID:28024149
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (5t77.pdb1.gz) 251 Kb
  • LPC: Ligand-Protein Contacts for 5T77
  • CSU: Contacts of Structural Units for 5T77
  • Structure Factors (504 Kb)
  • Retrieve 5T77 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T77 from S2C, [Save to disk]
  • Re-refined 5t77 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T77 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T77
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t77_A] [5t77]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T77
  • Community annotation for 5T77 at PDBWiki (http://pdbwiki.org)

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