5T7T Sugar Binding Protein date Sep 05, 2016
title Galectin-8 N Terminal Domain In Complex With Lnt
authors M.H.Bohari, X.Yu, H.Blanchard
compound source
Molecule: Galectin-8
Chain: A
Fragment: N-Terminal Domaine (Unp Residues 1-155)
Synonym: Gal-8,Po66 Carbohydrate-Binding Protein,Po66-Cbp,P Carcinoma Tumor Antigen 1,Pcta-1;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lgals8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.400 49.610 80.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand CL, CME, GAL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based rationale for differential recognition of lacto- and neolacto- series glycosphingolipids by the N-terminal domain of human galectin-8., Bohari MH, Yu X, Zick Y, Blanchard H, Sci Rep. 2016 Dec 21;6:39556. doi: 10.1038/srep39556. PMID:28000747
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (5t7t.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 5T7T
  • CSU: Contacts of Structural Units for 5T7T
  • Structure Factors (279 Kb)
  • Retrieve 5T7T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T7T from S2C, [Save to disk]
  • Re-refined 5t7t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T7T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T7T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t7t] [5t7t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T7T
  • Community annotation for 5T7T at PDBWiki (http://pdbwiki.org)

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