5T8E Hormone Receptor date Sep 07, 2016
title Synthesis And Biological Evaluation Of Novel Selective Andro Receptor Modulators (Sarms). Part II: Optimization Of 4-(Py 1-Yl)Benzonitrile Derivatives
authors K.P.Wilson
compound source
Molecule: Androgen Receptor
Chain: A
Fragment: Unp Residues 132-388
Synonym: Dihydrotestosterone Receptor,Nuclear Receptor Subf Group C Member 4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ar, Dhtr, Nr3c4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.804 66.195 70.932 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.71 Å
ligand 77U, GOL enzyme
Primary referenceSynthesis and biological evaluation of novel selective androgen receptor modulators (SARMs). Part II: Optimization of 4-(pyrrolidin-1-yl)benzonitrile derivatives., Asano M, Hitaka T, Imada T, Yamada M, Morimoto M, Shinohara H, Hara T, Yamaoka M, Santou T, Nakayama M, Imai Y, Habuka N, Yano J, Wilson K, Fujita H, Hasuoka A, Bioorg Med Chem Lett. 2017 May 1;27(9):1897-1901. doi:, 10.1016/j.bmcl.2017.03.038. Epub 2017 Mar 21. PMID:28363748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (5t8e.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5T8E
  • CSU: Contacts of Structural Units for 5T8E
  • Structure Factors (149 Kb)
  • Retrieve 5T8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T8E from S2C, [Save to disk]
  • Re-refined 5t8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5T8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T8E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t8e] [5t8e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5T8E
  • Community annotation for 5T8E at PDBWiki (http://pdbwiki.org)

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