5TBB Postcatalytic ternary complex of Human DNA Polymerase Beta with Gapped DNA substrate, incorporated (-)FTC and PPi. date
authors Vyas, R., Suo, Z.
compound source
symmetry
R_factor
R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.39
ligand 43X, ACT, MN, NA, PPV enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase., Reed AJ, Vyas R, Raper AT, Suo Z, J Am Chem Soc. 2017 Jan 11;139(1):465-471. doi: 10.1021/jacs.6b11258. Epub 2016, Dec 27. PMID:27959534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (5tbb.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5TBB
  • CSU: Contacts of Structural Units for 5TBB
  • Structure Factors (1061 Kb)
  • Retrieve 5TBB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TBB from S2C, [Save to disk]
  • Re-refined 5tbb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TBB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TBB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tbb_P] [5tbb_A] [5tbb_T] [5tbb] [5tbb_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TBB
  • Community annotation for 5TBB at PDBWiki (http://pdbwiki.org)

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