5TBN Transcription Structural Protein date Sep 12, 2016
title Solution Nmr Structure Of Phf20 Phd Domain In Complex With A H3k4me2 Peptide
authors G.Cui, M.V.Botuyan, G.Mer
compound source
Molecule: Phd Finger Protein 20
Chain: A
Fragment: Residues 646-699
Synonym: Glioma-Expressed Antigen 2,Hepatocellular Carcinom Associated Antigen 58,Novel Zinc Finger Protein,Transcripti Tzp;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phf20, C20orf104, Glea2, Hca58, Nzf, Tzp
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Histone H3.1
Chain: C
Fragment: Residues 2-12
Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l;
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand MLY, NH2, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePHF20 Readers Link Methylation of Histone H3K4 and p53 with H4K16 Acetylation., Klein BJ, Wang X, Cui G, Yuan C, Botuyan MV, Lin K, Lu Y, Wang X, Zhao Y, Bruns CJ, Mer G, Shi X, Kutateladze TG, Cell Rep. 2016 Oct 18;17(4):1158-1170. doi: 10.1016/j.celrep.2016.09.056. PMID:27760318
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (366 Kb) [Save to disk]
  • Biological Unit Coordinates (5tbn.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 5TBN
  • CSU: Contacts of Structural Units for 5TBN
  • Original NMR restraints for 5TBN from PDB
  • Retrieve 5TBN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TBN from S2C, [Save to disk]
    • View 5TBN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TBN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tbn_C] [5tbn_A] [5tbn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5TBN: [PHD ] by SMART
    • Other resources with information on 5TBN
  • Community annotation for 5TBN at PDBWiki (http://pdbwiki.org)

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