5TCE Oxidoreductase date Sep 14, 2016
title N-Terminal Microdomain Of 34-Mers From Hsdhodh - N-T(Dh)
authors E.Crusca, C.E.Munte
compound source
Molecule: Dihydroorotate Dehydrogenase (Quinone), Mitochond
Chain: A
Fragment: Residues 32-65
Synonym: Dhodehase,Dihydroorotate Oxidase
Ec: 1.3.5.2
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand NH2 enzyme Oxidoreductase E.C.1.3.5.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformational changes of the HsDHODH N-terminal Microdomain via DEER Spectroscopy., Vicente EF, Sahu ID, Costa-Filho AJ, Cilli EM, Lorigan GA, J Phys Chem B. 2015 Jul 16;119(28):8693-7. doi: 10.1021/acs.jpcb.5b01706. Epub, 2015 Jul 2. PMID:26086954
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (5tce.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 5TCE
  • CSU: Contacts of Structural Units for 5TCE
  • Original NMR restraints for 5TCE from PDB
  • Retrieve 5TCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TCE from S2C, [Save to disk]
    • View 5TCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TCE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tce_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TCE
  • Community annotation for 5TCE at PDBWiki (http://pdbwiki.org)

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