5TE5 Signaling Protein date Sep 20, 2016
title Crystal Structure Of Bos Taurus Opsin Regenerated With 6-Car Retinal Chromophore
authors S.Gulati, S.Banerjee, K.Katayama, P.D.Kiser, K.Palczewski
compound source
Molecule: Rhodopsin
Chain: A
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 31 2 1
R_factor 0.314 R_Free 0.357
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.725 81.725 200.012 90.00 90.00 120.00
method X-Ray Diffractionresolution 4.01 Å
ligand 7AB, ACE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePhotocyclic behavior of rhodopsin induced by an atypical isomerization mechanism., Gulati S, Jastrzebska B, Banerjee S, Placeres AL, Miszta P, Gao S, Gunderson K, Tochtrop GP, Filipek S, Katayama K, Kiser PD, Mogi M, Stewart PL, Palczewski K, Proc Natl Acad Sci U S A. 2017 Mar 13. pii: 201617446. doi:, 10.1073/pnas.1617446114. PMID:28289214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (5te5.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 5TE5
  • CSU: Contacts of Structural Units for 5TE5
  • Structure Factors (63 Kb)
  • Retrieve 5TE5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TE5 from S2C, [Save to disk]
  • Re-refined 5te5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TE5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TE5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5te5] [5te5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TE5
  • Community annotation for 5TE5 at PDBWiki (http://pdbwiki.org)

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