5TH4 Lyase Lyase Inhibitor date Sep 29, 2016
title Crystal Structure Of 1-Hydroxypyridine-2(1h)-Thione Bound To Carbonic Anhydrase 2 L198g
authors B.Dick, S.Cohen
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.200 41.333 72.159 90.00 104.65 90.00
method X-Ray Diffractionresolution 1.47 Å
ligand BEW, DMS, GOL, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEffect of donor atom identity on metal-binding pharmacophore coordination., Dick BL, Patel A, McCammon JA, Cohen SM, J Biol Inorg Chem. 2017 Apr 7. doi: 10.1007/s00775-017-1454-3. PMID:28389830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (5th4.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5TH4
  • CSU: Contacts of Structural Units for 5TH4
  • Structure Factors (2515 Kb)
  • Retrieve 5TH4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TH4 from S2C, [Save to disk]
  • Re-refined 5th4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TH4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TH4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5th4_A] [5th4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TH4
  • Community annotation for 5TH4 at PDBWiki (http://pdbwiki.org)

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