5TJ5 Motor Protein date Oct 03, 2016
title Atomic Model For The Membrane-Embedded Motor Of A Eukaryotic
authors M.T.Mazhab-Jafari, A.Rohou, C.Schmidt, S.A.Bueler, S.Benlekbir, C.V.Robinson, J.L.Rubinstein
compound source
Molecule: V-Type Proton Atpase Subunit A
Chain: A
Synonym: V-Atpase A 1 Subunit,V-Atpase 95 Kda Subunit,Vacuo Protein 1,Vacuolar Proton Pump A Subunit,Vacuolar Proton Translocating Atpase Subunit A 1,V-Atpase A 1 Subunit,V-Atp Subunit,Vacuolar Ph Protein 1,Vacuolar Proton Pump A Subuni Proton Translocating Atpase Subunit A 1,V-Atpase A 1 Subuni 95 Kda Subunit,Vacuolar Ph Protein 1,Vacuolar Proton Pump A Vacuolar Proton Translocating Atpase Subunit A 1,V-Atpase A Subunit,V-Atpase 95 Kda Subunit,Vacuolar Ph Protein 1,Vacuo Pump A Subunit,Vacuolar Proton Translocating Atpase Subunit
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: V-Type Proton Atpase Subunit C''
Chain: B
Synonym: V-Atpase Subunit C'',V-Atpase 22 Kda Proteolipid S Vacuolar Proton Pump C'' Subunit;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: V-Type Proton Atpase Subunit C'
Chain: D
Synonym: V-Atpase Subunit C',Proteolipid Protein Vma11, Trifluoperazine Resistance Protein 3,V-Atpase 16 Kda Proteo Subunit 2,Vacuolar Proton Pump C' Subunit;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: V-Type Proton Atpase Subunit C
Chain: E, F, G, H, I, J, M, N
Synonym: V-Atpase Subunit C,Guanine Nucleotide Exchange Fac Atpase 16 Kda Proteolipid Subunit 1,Vacuolar Proton Pump C
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: V-Type Proton Atpase Subunit E
Chain: L
Synonym: V-Atpase Subunit E,Low Dye-Binding Protein 10,Vacu Proton Pump Subunit E;
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: V-Type Proton Atpase Subunit F
Chain: O
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: V-Type Proton Atpase Subunit D
Chain: P
Synonym: V-Atpase Subunit D,V-Atpase 39 Kda Subunit,V-Atpas M39,Vacuolar Proton Pump Subunit D,V-Atpase Subunit D,V-Atp Subunit,V-Atpase Subunit M39,Vacuolar Proton Pump Subunit D Subunit D,V-Atpase 39 Kda Subunit,V-Atpase Subunit M39,Vacu Proton Pump Subunit D,V-Atpase Subunit D,V-Atpase 39 Kda Su Atpase Subunit M39,Vacuolar Proton Pump Subunit D,V-Atpase V-Atpase 39 Kda Subunit,V-Atpase Subunit M39,Vacuolar Proto Subunit D,V-Atpase Subunit D,V-Atpase 39 Kda Subunit,V-Atpa M39,Vacuolar Proton Pump Subunit D,V-Atpase Subunit D,V-Atp Subunit,V-Atpase Subunit M39,Vacuolar Proton Pump Subunit D Subunit D,V-Atpase 39 Kda Subunit,V-Atpase Subunit M39,Vacu Proton Pump Subunit D,V-Atpase Subunit D,V-Atpase 39 Kda Su Atpase Subunit M39,Vacuolar Proton Pump Subunit D,V-Atpase V-Atpase 39 Kda Subunit,V-Atpase Subunit M39,Vacuolar Proto Subunit D,V-Atpase Subunit D,V-Atpase 39 Kda Subunit,V-Atpa M39,Vacuolar Proton Pump Subunit D
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


F, J, N, E, H, M, D, I, G


L


P


Primary referenceAtomic model for the membrane-embedded VO motor of a eukaryotic V-ATPase., Mazhab-Jafari MT, Rohou A, Schmidt C, Bueler SA, Benlekbir S, Robinson CV, Rubinstein JL, Nature. 2016 Oct 24;539(7627):118-122. doi: 10.1038/nature19828. PMID:27776355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (5tj5.pdb1.gz) 254 Kb
  • CSU: Contacts of Structural Units for 5TJ5
  • Retrieve 5TJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TJ5 from S2C, [Save to disk]
    • View 5TJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TJ5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tj5_O] [5tj5] [5tj5_P] [5tj5_G] [5tj5_F] [5tj5_J] [5tj5_L] [5tj5_M] [5tj5_A] [5tj5_H] [5tj5_D] [5tj5_E] [5tj5_B] [5tj5_I] [5tj5_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TJ5
  • Community annotation for 5TJ5 at PDBWiki (http://pdbwiki.org)

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