5TL8 Oxidoreductase date Oct 10, 2016
title Naegleria Fowleri Cyp51-Posaconazole Complex
authors L.M.Podust, G.Jennings, C.Calvet-Alvarez, A.Debnath
compound source
Molecule: Protein Cyp51
Chain: A
Engineered: Yes
Other_details: 34 N-Terminal Residues Are Replaced With The Sequence Makktsskgkl 6xhis Tag Is Introduced At The C-Termi 371 And Cys 392 Are Spontaneously Oxidized To Sulfenic Acid
Organism_scientific: Naegleria Fowleri
Organism_taxid: 5763
Atcc: 30863
Gene: Nf0102700
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcw-Lic
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.030 55.040 71.620 90.00 100.07 90.00
method X-Ray Diffractionresolution 1.71 Å
ligand CA, CSO, EDO, HEM, X2N enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5tl8.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 5TL8
  • CSU: Contacts of Structural Units for 5TL8
  • Structure Factors (1117 Kb)
  • Retrieve 5TL8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TL8 from S2C, [Save to disk]
  • View 5TL8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TL8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tl8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TL8
  • Community annotation for 5TL8 at PDBWiki (http://pdbwiki.org)

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