5TMN Slow-and fast-binding inhibitors of thermolysin display different modes of binding. crystallographic analysis of extended phosphonamidate transition-state analogues date
authors Holden, H.M., Tronrud, D.E., Monzingo, A.F., Weaver, L.H., Matthews, B.W.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand 0PJ, CA, ZN enzyme
related structures by homologous chain: 1KEI, 2TMN
Gene
Ontology
ChainFunctionProcessComponent
E


Primary referenceSlow- and fast-binding inhibitors of thermolysin display different modes of binding: crystallographic analysis of extended phosphonamidate transition-state analogues., Holden HM, Tronrud DE, Monzingo AF, Weaver LH, Matthews BW, Biochemistry 1987 Dec 29;26(26):8542-53. PMID:3442675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5tmn.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 5TMN
  • CSU: Contacts of Structural Units for 5TMN
  • Likely Quarternary Molecular Structure file(s) for 5TMN
  • Structure Factors (204 Kb)
  • Retrieve 5TMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TMN from S2C, [Save to disk]
  • Re-refined 5tmn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TMN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5TMN, from MSDmotif at EBI
  • Genome occurence of 5TMN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5tmne_, region E [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tmn] [5tmn_I] [5tmn_E]
  • SWISS-PROT database: [P00800]
  • Domain organization of [THER_BACTH] by SWISSPFAM
    • Other resources with information on 5TMN
  • Community annotation for 5TMN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science