5TP9 Transport Protein date Oct 20, 2016
title Structure Of The Human Glun1glun2a Lbd In Complex With Comp (Gne9178)
authors H.J.A.Wallweber, P.J.Lupardus
compound source
Molecule: Glutamate Receptor Ionotropic, Nmda 2a
Chain: A
Fragment: Ligand Binding Domain (Unp Residues 401-539, Gt L Residues 661-802);
Synonym: Glun2a, Glutamate [Nmda] Receptor Subunit Epsilon- Methyl D-Aspartate Receptor Subtype 2a, Hnr2a;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grin2a, Nmdar2a
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Glutamate Receptor Ionotropic, Nmda 1
Chain: B
Fragment: Unp Residues 394-544, Gt Linker, Unp Residues 663
Synonym: Glun1, Glutamate [Nmda] Receptor Subunit Zeta-1, N Aspartate Receptor Subunit Nr1, Nmd-R1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grin1, Nmdar1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.260 89.780 120.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 7H0, ACT, CA, GLU, GLY enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (5tp9.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 5TP9
  • CSU: Contacts of Structural Units for 5TP9
  • Structure Factors (444 Kb)
  • Retrieve 5TP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TP9 from S2C, [Save to disk]
  • Re-refined 5tp9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TP9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tp9_B] [5tp9] [5tp9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5TP9: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART
  • Other resources with information on 5TP9
  • Community annotation for 5TP9 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science