5TPA	Transport Protein	date	Oct 20, 2016
title	Structure Of The Human Glun1glun2a Lbd In Complex With Comp (Gne3500)
authors	H.J.A.Wallweber, P.J.Lupardus
compound		source
Molecule: Glutamate Receptor Ionotropic, Nmda 2a Chain: A Fragment: Ligand Binding Domain (Unp Residues 401-539, Gt L Residues 661-802); Synonym: Glun2a, Glutamate [Nmda] Receptor Subunit Epsilon- Methyl D-Aspartate Receptor Subtype 2a, Hnr2a; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Grin2a, Nmdar2a Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
Molecule: Glutamate Receptor Ionotropic, Nmda 1 Chain: B Fragment: Unp Residues 394-544, Gt Linker, Unp Residues 663 Synonym: Glun1, Glutamate [Nmda] Receptor Subunit Zeta-1, N Aspartate Receptor Subunit Nr1, Nmd-R1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Grin1, Nmdar1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 21 21 21	R_factor 0.187 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.757 90.239 122.658 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.48 Å
ligand	7H2, GLU, GLY	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	GluN2A-Selective Pyridopyrimidinone Series of NMDAR Positive Allosteric Modulators with an Improved in Vivo Profile., Villemure E, Volgraf M, Jiang Y, Wu G, Ly CQ, Yuen PW, Lu A, Luo X, Liu M, Zhang S, Lupardus PJ, Wallweber HJ, Liederer BM, Deshmukh G, Plise E, Tay S, Wang TM, Hanson JE, Hackos DH, Scearce-Levie K, Schwarz JB, Sellers BD, ACS Med Chem Lett. 2016 Oct 31;8(1):84-89. doi: 10.1021/acsmedchemlett.6b00388., eCollection 2017 Jan 12. PMID:28105280

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (5tpa.pdb1.gz) 94 Kb LPC: Ligand-Protein Contacts for 5TPA CSU: Contacts of Structural Units for 5TPA Structure Factors (471 Kb) Retrieve 5TPA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TPA from S2C, [Save to disk] Re-refined 5tpa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TPA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5TPA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tpa] [5tpa_A] [5tpa_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5TPA: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART

Other resources with information on 5TPA

Community annotation for 5TPA at PDBWiki (http://pdbwiki.org)

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