5TQC Ribosomal Protein date Oct 23, 2016
title Crystal Structure Of Transport Factor Karyopherin-Beta 2 In With The Py-Nls Of Ribosomal Protein L4 (Rpl4)
authors F.M.Huber, A.Hoelz
compound source
Molecule: Transportin-1,Transportin-1
Chain: A
Synonym: Importin Beta-2,Karyopherin Beta-2,M9 Region Inter Protein,Mip,Importin Beta-2,Karyopherin Beta-2,M9 Region In Protein,Mip;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnpo1, Kpnb2, Mip1, Trn
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 60s Ribosomal Protein L4-Like Protein
Chain: B
Engineered: Yes

Organism_scientific: Chaetomium Thermophilum
Organism_taxid: 759272
Strain: Dsm 1495 Cbs 144.50 Imi 039719
Gene: Ctht_0061540
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 2 21 21
R_factor 0.208 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.630 130.700 174.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
Gene CTHT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular basis for protection of ribosomal protein L4 from cellular degradation., Huber FM, Hoelz A, Nat Commun. 2017 Feb 2;8:14354. doi: 10.1038/ncomms14354. PMID:28148929
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5tqc.pdb1.gz) 135 Kb
  • CSU: Contacts of Structural Units for 5TQC
  • Structure Factors (279 Kb)
  • Retrieve 5TQC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TQC from S2C, [Save to disk]
  • Re-refined 5tqc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TQC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TQC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tqc_A] [5tqc_B] [5tqc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TQC
  • Community annotation for 5TQC at PDBWiki (http://pdbwiki.org)

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