5TSA Metal Binding Protein date Oct 28, 2016
title Crystal Structure Of The Zrt-Irt-Like Protein From Bordetel Bronchiseptica With Bound Zn2+
authors T.Zhang, M.Fellner, D.Sui, J.Liu, J.Hu
compound source
Molecule: Membrane Protein
Chain: A
Engineered: Yes
 Organism_scientific: Bordetella Bronchiseptica (Strain Atcc Nctc 13252 Rb50);
Organism_taxid: 257310
Strain: Atcc Baa-588 Nctc 13252 Rb50
Gene: Bb2405
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plw01
symmetry Space Group: I 1 2 1
R_factor 0.212 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.006 61.073 94.394 90.00 104.02 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CD, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of a ZIP zinc transporter reveal a binuclear metal center in the transport pathway., Zhang T, Liu J, Fellner M, Zhang C, Sui D, Hu J, Sci Adv. 2017 Aug 25;3(8):e1700344. doi: 10.1126/sciadv.1700344. eCollection 2017, Aug. PMID:28875161
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (5tsa.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 5TSA
  • CSU: Contacts of Structural Units for 5TSA
  • Structure Factors (802 Kb)
  • Retrieve 5TSA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TSA from S2C, [Save to disk]
    • View 5TSA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TSA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tsa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TSA
  • Community annotation for 5TSA at PDBWiki (http://pdbwiki.org)

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