5U09 Membrane Protein date Nov 23, 2016
title High-Resolution Crystal Structure Of The Human Cb1 Cannabino Receptor
authors Z.H.Shao, J.Yin, D.Rosenbaum
compound source
Molecule: Cannabinoid Receptor 1,Glga Glycogen Synthase
Chain: A
Fragment: P21554 Residues 90-301, 333-421 And Q9v2j8 Residu 413;
Synonym: Cb1,Cann6,Glycogen Synthase
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Pyrococcus Abyssi (Strai Orsay);
Organism_common: Human
Organism_taxid: 9606, 272844
Strain: Ge5 Orsay
Gene: Cnr1, Cnr, Pab2292
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.652 80.381 81.178 90.00 91.72 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 7DY, PEG, SO4 enzyme
note 5U09 supersedes 5TJV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution crystal structure of the human CB1 cannabinoid receptor., Shao Z, Yin J, Chapman K, Grzemska M, Clark L, Wang J, Rosenbaum DM, Nature. 2016 Nov 16. doi: 10.1038/nature20613. PMID:27851727
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (5u09.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 5U09
  • CSU: Contacts of Structural Units for 5U09
  • Structure Factors (502 Kb)
  • Retrieve 5U09 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U09 from S2C, [Save to disk]
  • Re-refined 5u09 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5U09 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5U09
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u09] [5u09_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5U09
  • Community annotation for 5U09 at PDBWiki (http://pdbwiki.org)

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