5U2M	Transferase Transferase Inhibitor	date	Nov 30, 2016
title	Crystal Structure Of Human Nampt With A-1293201
authors	K.L.Longenecker, D.Raich, A.V.Korepanova
compound		source
Molecule: Nicotinamide Phosphoribosyltransferase Chain: A, B Synonym: Nampt,Pre-B-Cell Colony-Enhancing Factor 1,Pre-B C Enhancing Factor,Visfatin; Ec: 2.4.2.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nampt, Pbef, Pbef1 Expression_system: Mammalia Expression_system_taxid: 40674 Expression_system_cell_line: Hek 293-6e
symmetry	Space Group: P 1 21 1	R_factor 0.192 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.978 106.611 83.122 90.00 96.64 90.00
method	X-Ray Diffraction	resolution	1.89 Å
ligand	7T7, SO4	enzyme	Transferase E.C.2.4.2.12 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery and Characterization of Novel Nonsubstrate and Substrate NAMPT Inhibitors., Wilsbacher JL, Cheng M, Cheng D, Trammell SAJ, Shi Y, Guo J, Koeniger SL, Kovar PJ, He Y, Selvaraju S, Heyman HR, Sorensen BK, Clark RF, Hansen TM, Longenecker KL, Raich D, Korepanova AV, Cepa S, Towne DL, Abraham VC, Tang H, Richardson PL, McLoughlin SM, Badagnani I, Curtin ML, Michaelides MR, Maag D, Buchanan FG, Chiang GG, Gao W, Rosenberg SH, Brenner C, Tse C, Mol Cancer Ther. 2017 Jul;16(7):1236-1245. doi: 10.1158/1535-7163.MCT-16-0819., Epub 2017 May 3. PMID:28468779

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk] Biological Unit Coordinates (5u2m.pdb1.gz) 160 Kb LPC: Ligand-Protein Contacts for 5U2M CSU: Contacts of Structural Units for 5U2M Structure Factors (3284 Kb) Retrieve 5U2M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5U2M from S2C, [Save to disk] Re-refined 5u2m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5U2M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5U2M

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5u2m_A] [5u2m_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5U2M

Community annotation for 5U2M at PDBWiki (http://pdbwiki.org)

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