5U2V	Immune System	date	Dec 01, 2016
title	Structure Of Human Mr1-Hmb In Complex With Human Mait A-F7 T
authors	A.N.Keller, J.Rossjohn
compound		source
Molecule: Major Histocompatibility Complex Class I-Related Protein; Chain: A, C Fragment: Unp Residues 23-292 Synonym: Mhc Class I-Related Gene Protein,Class I Histocomp Antigen-Like Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mr1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
Molecule: Beta-2-Microglobulin Chain: B, D Fragment: Unp Residues 21-119 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
Molecule: Mait T-Cell Receptor Alpha Chain Chain: G, E Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Travtrac Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
Molecule: Mait T-Cell Receptor Beta Chain Chain: H, F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Trbvtrbc Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
symmetry	Space Group: C 1 2 1	R_factor 0.179 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 216.232 69.730 142.400 90.00 104.36 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	7WQ, GOL, PRO	enzyme
Gene Ontology	Chain Function Process Component D, B cellular response to iron io...
Primary reference	Drugs and drug-like molecules can modulate the function of mucosal-associated invariant T cells., Keller AN, Eckle SB, Xu W, Liu L, Hughes VA, Mak JY, Meehan BS, Pediongco T, Birkinshaw RW, Chen Z, Wang H, D'Souza C, Kjer-Nielsen L, Gherardin NA, Godfrey DI, Kostenko L, Corbett AJ, Purcell AW, Fairlie DP, McCluskey J, Rossjohn J, Nat Immunol. 2017 Feb 6. doi: 10.1038/ni.3679. PMID:28166217

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (556 Kb) [Save to disk] Biological Unit Coordinates (5u2v.pdb1.gz) 273 Kb Biological Unit Coordinates (5u2v.pdb2.gz) 275 Kb LPC: Ligand-Protein Contacts for 5U2V CSU: Contacts of Structural Units for 5U2V Structure Factors (4903 Kb) Retrieve 5U2V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5U2V from S2C, [Save to disk] Re-refined 5u2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5U2V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5U2V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5u2v_A] [5u2v_F] [5u2v_E] [5u2v_D] [5u2v_B] [5u2v_H] [5u2v_G] [5u2v] [5u2v_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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