5U44 Protein Binding Activator date Dec 03, 2016
title Human Ppardelta Ligand-Binding Domain In Complexed With Spec Agonist 13
authors C.C.Wu, T.J.Baiga, M.Downes, J.J.La Clair, A.R.Atkins, S.B.Richa T.A.Stockley-Noel, M.E.Bowman, R.M.Evans, J.P.Noel
compound source
Molecule: Peroxisome Proliferator-Activated Receptor Delta
Chain: A, B
Fragment: Ligand-Binding Domain
Synonym: Ppar-Delta,Nuci,Nuclear Hormone Receptor 1,Nuc1,Nu Receptor Subfamily 1 Group C Member 2,Peroxisome Proliferat Activated Receptor Beta,Ppar-Beta;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppard, Nr1c2, Pparb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.570 95.410 96.180 90.00 97.65 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand 7SV, B7G, PGO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for specific ligation of the peroxisome proliferator-activated receptor delta., Wu CC, Baiga TJ, Downes M, La Clair JJ, Atkins AR, Richard SB, Fan W, Stockley-Noel TA, Bowman ME, Noel JP, Evans RM, Proc Natl Acad Sci U S A. 2017 Mar 20. pii: 201621513. doi:, 10.1073/pnas.1621513114. PMID:28320959
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]
  • Biological Unit Coordinates (5u44.pdb1.gz) 134 Kb
  • Biological Unit Coordinates (5u44.pdb2.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 5U44
  • CSU: Contacts of Structural Units for 5U44
  • Structure Factors (690 Kb)
  • Retrieve 5U44 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U44 from S2C, [Save to disk]
  • Re-refined 5u44 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5U44 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5U44
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u44_B] [5u44] [5u44_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5U44
  • Community annotation for 5U44 at PDBWiki (http://pdbwiki.org)

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