5U62	Transcription Transferase	date	Dec 07, 2016
title	Crystal Structure Of Eed In Complex With H3k27me3 Peptide An (Benzo[D][1,3]Dioxol-4-Ylmethyl)-5,6,7,8-Tetrahydroimidazo[ A]Pyridin-3-Amine
authors	D.Bussiere, W.Shu
compound		source
Molecule: Polycomb Protein Eed Chain: A, B Fragment: Unp Residues 76-441 Synonym: Heed,Wd Protein Associating With Integrin Cytoplas 1,Wait-1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Eed Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
Molecule: Histone-Lysine N-Methyltransferase Ezh2 Chain: C, D Fragment: Unp Residues 39-68 Synonym: Enx-1,Enhancer Of Zeste Homolog 2,Lysine N-Methylt 6; Ec: 2.1.1.43 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.168 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.881 178.113 50.480 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	7WD, GOL, YT3	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Structure-Guided Design of EED Binders Allosterically Inhibiting the Epigenetic Polycomb Repressive Complex 2 (PRC2) Methyltransferase., Lingel A, Sendzik M, Huang Y, Shultz MD, Cantwell J, Dillon MP, Fu X, Fuller J, Gabriel T, Gu J, Jiang X, Li L, Liang F, McKenna M, Qi W, Rao W, Sheng X, Shu W, Sutton J, Taft B, Wang L, Zeng J, Zhang H, Zhang M, Zhao K, Lindvall M, Bussiere DE, J Med Chem. 2017 Jan 12;60(1):415-427. doi: 10.1021/acs.jmedchem.6b01473. Epub, 2017 Jan 3. PMID:27992714

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk] Biological Unit Coordinates (5u62.pdb1.gz) 134 Kb Biological Unit Coordinates (5u62.pdb2.gz) 136 Kb LPC: Ligand-Protein Contacts for 5U62 CSU: Contacts of Structural Units for 5U62 Structure Factors (2248 Kb) Retrieve 5U62 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5U62 from S2C, [Save to disk] Re-refined 5u62 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5U62

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5u62] [5u62_D] [5u62_B] [5u62_A] [5u62_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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