OCA Atlas for 5U6P

5U6P

Transport Protein

date

Dec 08, 2016

title

Structure Of The Human Hcn1 Hyperpolarization-Activated Cycl Nucleotide-Gated Ion Channel In Complex With Camp

authors

C.H.Lee, R.Mackinnon

compound

source

Molecule: Potassiumsodium Hyperpolarization-Activated Cycl Nucleotide-Gated Channel 11;
Chain: A, B, C, D
Fragment: Unp Residues 1-635,866-890
Synonym: Brain Cyclic Nucleotide-Gated Channel 1, Bcng-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hcn1, Bcng1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Potassiumsodium Hyperpolarization-Activated Cycl Nucleotide-Gated Channel 11;
Chain: E, F, G, H
Synonym: Brain Cyclic Nucleotide-Gated Channel 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hcn1, Bcng1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

3.51 Å

ligand

CMP

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, D, C, B

Primary reference

Structures of the Human HCN1 Hyperpolarization-Activated Channel., Lee CH, MacKinnon R, Cell. 2017 Jan 12;168(1-2):111-120.e11. doi: 10.1016/j.cell.2016.12.023. Epub, 2017 Jan 12. PMID:28086084

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (321 Kb) [Save to disk]

Biological Unit Coordinates (5u6p.pdb1.gz) 313 Kb

LPC: Ligand-Protein Contacts for 5U6P

CSU: Contacts of Structural Units for 5U6P

Retrieve 5U6P in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5U6P from S2C, [Save to disk]

View 5U6P in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5U6P

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5u6p_D] [5u6p_C] [5u6p_H] [5u6p_F] [5u6p_G] [5u6p_E] [5u6p_B] [5u6p] [5u6p_A]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5U6P

Community annotation for 5U6P at PDBWiki (http://pdbwiki.org)

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