5UF8 Signaling Protein date Jan 03, 2017
title Crystal Structure Of The Arf Family Small Gtpase Arf2 From C Albicans In Complex With Gdp
authors P.J.Stogios, T.Skarina, R.Di Leo, A.Savchenko, W.F.Anderson, Cent Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Potential Adp-Ribosylation Factor
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Candida Albicans (Strain Sc5314 Atcc 2876);
Organism_common: Yeast
Organism_taxid: 237561
Strain: Sc5314 Atcc Mya-2876
Gene: Arf2, Orf19.5964, Cao19.13385, Cao19.5964
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg68sbptev
symmetry Space Group: P 1
R_factor 0.235 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.289 64.362 79.236 78.11 83.73 72.77
method X-Ray Diffractionresolution 1.87 Å
ligand GDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (5uf8.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (5uf8.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (5uf8.pdb3.gz) 58 Kb
  • Biological Unit Coordinates (5uf8.pdb4.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 5UF8
  • CSU: Contacts of Structural Units for 5UF8
  • Structure Factors (408 Kb)
  • Retrieve 5UF8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UF8 from S2C, [Save to disk]
  • Re-refined 5uf8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UF8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UF8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uf8_A] [5uf8] [5uf8_D] [5uf8_C] [5uf8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UF8
  • Community annotation for 5UF8 at PDBWiki (http://pdbwiki.org)

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