5UHK Hydrolase date Jan 11, 2017
title Crystal Structure Of The Core Catalytic Domain Of Human O-Gl
authors D.J.Klein, N.L.Elsen
compound source
Molecule: O-Glcnacase Tim-Barrel Domain
Chain: A, C
Synonym: Oga,Beta-N-Acetylglucosaminidase,Beta-N- Acetylhexosaminidase,Beta-Hexosaminidase,Meningioma-Express 5,N-Acetyl-Beta-D-Glucosaminidase,N-Acetyl-Beta-Glucosamini Nuclear Cytoplasmic O-Glcnacase And Acetyltransferase,Ncoat
Ec: 3.2.1.169,3.2.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mgea5, Hexc, Kiaa0679, Mea5
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: O-Glcnacase Stalk Domain
Chain: B, D
Synonym: Oga,Beta-N-Acetylglucosaminidase,Beta-N- Acetylhexosaminidase,Beta-Hexosaminidase,Meningioma-Express 5,N-Acetyl-Beta-D-Glucosaminidase,N-Acetyl-Beta-Glucosamini Nuclear Cytoplasmic O-Glcnacase And Acetyltransferase,Ncoat
Ec: 3.2.1.169,3.2.1.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mgea5, Hexc, Kiaa0679, Mea5
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 41 21 2
R_factor 0.194 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.800 96.800 256.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.97 Å
ligand GOL enzyme Hydrolase E.C.3.2.1.169 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5uhk.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 5UHK
  • CSU: Contacts of Structural Units for 5UHK
  • Structure Factors (842 Kb)
  • Retrieve 5UHK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UHK from S2C, [Save to disk]
  • Re-refined 5uhk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UHK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UHK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uhk_A] [5uhk] [5uhk_D] [5uhk_B] [5uhk_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UHK
  • Community annotation for 5UHK at PDBWiki (http://pdbwiki.org)

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