5UHQ Transport Protein date Jan 11, 2017
title Structure Of A Semisweet Q20a Mutant
authors N.M.Fastman, L.Feng
compound source
Molecule: Sugar Transporter Semisweet
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Leptospira Biflexa Serovar Patoc (Stra Atcc 23582 Paris);
Organism_taxid: 456481
Strain: Patoc 1 Atcc 23582 Paris
Gene: Lepbi_i1613
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.227 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.709 189.014 90.858 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.78 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceMechanism of Substrate Translocation in an Alternating Access Transporter., Latorraca NR, Fastman NM, Venkatakrishnan AJ, Frommer WB, Dror RO, Feng L, Cell. 2017 Mar 23;169(1):96-107.e12. doi: 10.1016/j.cell.2017.03.010. PMID:28340354
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (5uhq.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (5uhq.pdb2.gz) 27 Kb
  • CSU: Contacts of Structural Units for 5UHQ
  • Structure Factors (380 Kb)
  • Retrieve 5UHQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UHQ from S2C, [Save to disk]
  • Re-refined 5uhq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UHQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UHQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uhq_A] [5uhq_B] [5uhq_C] [5uhq_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UHQ
  • Community annotation for 5UHQ at PDBWiki (http://pdbwiki.org)

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