5UJR Antimicrobial Protein date Jan 18, 2017
title Nmr Solution Structure Of The Two-Component Bacteriocin Cbnx
authors J.Z.Acedo, K.M.Towle, C.T.Lohans, R.T.Mckay, M.Miskolzie, T.Doerk J.C.Vederas, L.A.Martin-Visscher
compound source
Molecule: Bacteriocin
Chain: A
Engineered: Yes
Organism_scientific: Carnobacterium Maltaromaticum
Organism_taxid: 2751
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
methodSolution NMR
Primary referenceIdentification and three-dimensional structure of carnobacteriocin XY, a class IIb bacteriocin produced by Carnobacteria., Acedo JZ, Towle KM, Lohans CT, Miskolzie M, McKay RT, Doerksen TA, Vederas JC, Martin-Visscher LA, FEBS Lett. 2017 May;591(10):1349-1359. doi: 10.1002/1873-3468.12648. Epub 2017, Apr 27. PMID:28391617
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (5ujr.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 5UJR
  • Original NMR restraints for 5UJR from PDB
  • Retrieve 5UJR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UJR from S2C, [Save to disk]
  • View 5UJR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UJR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ujr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UJR
  • Community annotation for 5UJR at PDBWiki (http://pdbwiki.org)

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