5ULD Transport Protein date Jan 24, 2017
title Structure And Function Of The Divalent Anionna+ Symporter F Cholerae And A Humanized Variant
authors M.Lu
compound source
Molecule: Transporter, Nadc Family
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Vibrio Cholerae Serotype O1 (Strain At El Tor Inaba N16961);
Organism_taxid: 243277
Strain: Atcc 39315 El Tor Inaba N16961
Gene: Vc_a0025
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.252 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.087 101.535 168.882 90.00 99.73 90.00
method X-Ray Diffractionresolution 2.78 Å
ligand CIT, NA enzyme
Gene VC
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and function of the divalent anion/Na+ symporter from Vibrio cholerae and a humanized variant., Nie R, Stark S, Symersky J, Kaplan RS, Lu M, Nat Commun. 2017 Apr 24;8:15009. doi: 10.1038/ncomms15009. PMID:28436435
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (5uld.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (5uld.pdb2.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 5ULD
  • CSU: Contacts of Structural Units for 5ULD
  • Structure Factors (813 Kb)
  • Retrieve 5ULD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ULD from S2C, [Save to disk]
  • Re-refined 5uld structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ULD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ULD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uld] [5uld_A] [5uld_C] [5uld_B] [5uld_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ULD
  • Community annotation for 5ULD at PDBWiki (http://pdbwiki.org)

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