5UOR Transferase Transferase Inhibitor date Feb 01, 2017
title Structure-Based Design Of Ask1 Inhibitors As Potential First Agents For Heart Failure
authors D.R.Dougan
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 5
Chain: A, B
Fragment: Unp Residues 670-939
Synonym: Apoptosis Signal-Regulating Kinase 1,Ask-1,Mapker Kinase 5,Mekk 5;
Ec: 2.7.11.25
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map3k5, Ask1, Mapkkk5, Mekk5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peh8
symmetry Space Group: P 65 2 2
R_factor 0.202 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.485 78.485 431.659 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand 8GV, SO4 enzyme Transferase E.C.2.7.11.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-Based Design of ASK1 Inhibitors as Potential Agents for Heart Failure., Lanier M, Pickens J, Bigi SV, Bradshaw-Pierce EL, Chambers A, Cheruvallath ZS, Cole D, Dougan DR, Ermolieff J, Gibson T, Halkowycz P, Hirokawa A, Ivetac A, Miura J, Nunez E, Sabat M, Tyhonas J, Wang H, Wang X, Swann S, ACS Med Chem Lett. 2017 Feb 8;8(3):316-320. doi: 10.1021/acsmedchemlett.6b00481. , eCollection 2017 Mar 9. PMID:28337323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk]
  • Biological Unit Coordinates (5uor.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (5uor.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 5UOR
  • CSU: Contacts of Structural Units for 5UOR
  • Structure Factors (622 Kb)
  • Retrieve 5UOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UOR from S2C, [Save to disk]
  • Re-refined 5uor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UOR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uor_A] [5uor_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UOR
  • Community annotation for 5UOR at PDBWiki (http://pdbwiki.org)

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