5UP2 Membrane Protein date Feb 01, 2017
title Triheteromeric Nmda Receptor Glun1glun2aglun2b In Complex Glycine, Glutamate, Ro 25-6981, Mk-801 And A Glun2b-Specifi Ph 6.5
authors W.Lu, J.Du, A.Goehring, E.Gouaux
compound source
Molecule: N-Methyl-D-Aspartate Receptor Subunit Nr1-8a
Chain: A, C
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: N-Methyl-D-Aspartate Receptor Subunit Nr2a
Chain: B
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Loc100127346
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Ionotropic Glutamate Receptor Subunit Nr2b
Chain: D
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Nr2b
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Glun2b-Specific Fab, Termed 11d1
Chain: F, G
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.00 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCryo-EM structures of the triheteromeric NMDA receptor and its allosteric modulation., Lu W, Du J, Goehring A, Gouaux E, Science. 2017 Feb 23. pii: eaal3729. doi: 10.1126/science.aal3729. PMID:28232581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (716 Kb) [Save to disk]
  • Biological Unit Coordinates (5up2.pdb1.gz) 704 Kb
  • LPC: Ligand-Protein Contacts for 5UP2
  • CSU: Contacts of Structural Units for 5UP2
  • Retrieve 5UP2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UP2 from S2C, [Save to disk]
  • View 5UP2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UP2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5up2_C] [5up2_F] [5up2] [5up2_B] [5up2_D] [5up2_A] [5up2_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UP2
  • Community annotation for 5UP2 at PDBWiki (http://pdbwiki.org)

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