5UP7 Oxidoreductase date Feb 01, 2017
title Crystal Structure Of The Ni-Bound Human Heavy-Chain Ferritin Delta C-Star Variant
authors J.B.Bailey, L.Zhang, J.A.Chiong, S.Ahn, F.A.Tezcan
compound source
Molecule: Ferritin Heavy Chain
Chain: A
Synonym: Ferritin H Subunit,Cell Proliferation-Inducing Gen Protein;
Ec: 1.16.3.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fth1, Fth, Fthl6, Oksw-Cl.84, Pig15
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: F 4 3 2
R_factor 0.159 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.150 180.150 180.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand CA, CL, EDO, NI enzyme Oxidoreductase E.C.1.16.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (5up7.pdb1.gz) 836 Kb
  • LPC: Ligand-Protein Contacts for 5UP7
  • CSU: Contacts of Structural Units for 5UP7
  • Structure Factors (308 Kb)
  • Retrieve 5UP7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UP7 from S2C, [Save to disk]
  • Re-refined 5up7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UP7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UP7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5up7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UP7
  • Community annotation for 5UP7 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science