5URQ Oxidoreductase Oxidoreductase Inhibitor date Feb 12, 2017
title Crystal Structure Of The Catalytic Domain Of The Inosine Mon Dehydrogenase From Campylobacter Jejuni In The Complex With P176
authors Y.Kim, N.Maltseva, M.Makowska-Grzyska, M.Gu, D.Gollapalli, L.Heds W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Inosine-5'-Monophosphate Dehydrogenase
Chain: A, B, C, D, E, F, H, G
Synonym: Impdh
Ec: 1.1.1.205
Engineered: Yes
 Organism_scientific: Campylobacter Jejuni Subsp. Jejuni, Campylobacter Jejuni Subsp. Jejuni Cg8486;
Organism_taxid: 32022, 398000
Gene: Guab, Cj14980a_1064, Guab, Cj8486_1016
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.487 141.793 121.640 90.00 94.47 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 8L7, IMP, K enzyme Oxidoreductase E.C.1.1.1.205 BRENDA
Gene CJ8486
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (894 Kb) [Save to disk]
  • Biological Unit Coordinates (5urq.pdb1.gz) 441 Kb
  • Biological Unit Coordinates (5urq.pdb2.gz) 443 Kb
  • LPC: Ligand-Protein Contacts for 5URQ
  • CSU: Contacts of Structural Units for 5URQ
  • Structure Factors (3599 Kb)
  • Retrieve 5URQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5URQ from S2C, [Save to disk]
  • Re-refined 5urq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5URQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5URQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5urq_G] [5urq_D] [5urq] [5urq_E] [5urq_C] [5urq_B] [5urq_H] [5urq_F] [5urq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5URQ
  • Community annotation for 5URQ at PDBWiki (http://pdbwiki.org)

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