5USJ	Hydrolase	date	Feb 13, 2017
title	Crystal Structure Of Human Kras G12d Mutant In Complex With
authors	C.S.Huang, A.Kaplan, B.R.Stockwell, L.Tong
compound		source
Molecule: Gtpase Kras Chain: A, B, C, D, E, F Synonym: K-Ras 2, Ki-Ras, C-K-Ras, C-Ki-Ras Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kras, Kras2, Rask2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 1	R_factor 0.177 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.423 63.491 81.991 91.51 112.63 115.44
method	X-Ray Diffraction	resolution	1.94 Å
ligand	GNP, MG	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Multivalent Small-Molecule Pan-RAS Inhibitors., Welsch ME, Kaplan A, Chambers JM, Stokes ME, Bos PH, Zask A, Zhang Y, Sanchez-Martin M, Badgley MA, Huang CS, Tran TH, Akkiraju H, Brown LM, Nandakumar R, Cremers S, Yang WS, Tong L, Olive KP, Ferrando A, Stockwell BR, Cell. 2017 Feb 23;168(5):878-889.e29. doi: 10.1016/j.cell.2017.02.006. PMID:28235199

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk] Biological Unit Coordinates (5usj.pdb1.gz) 33 Kb Biological Unit Coordinates (5usj.pdb2.gz) 33 Kb Biological Unit Coordinates (5usj.pdb3.gz) 34 Kb Biological Unit Coordinates (5usj.pdb4.gz) 32 Kb Biological Unit Coordinates (5usj.pdb5.gz) 33 Kb Biological Unit Coordinates (5usj.pdb6.gz) 33 Kb LPC: Ligand-Protein Contacts for 5USJ CSU: Contacts of Structural Units for 5USJ Structure Factors (2103 Kb) Retrieve 5USJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5USJ from S2C, [Save to disk] Re-refined 5usj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5USJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5USJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5usj_C] [5usj_E] [5usj_B] [5usj] [5usj_D] [5usj_A] [5usj_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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