5UVI Membrane Protein date Feb 20, 2017
title Serial Millisecond Crystallography Of Membrane And Soluble P Micro-Crystals Using Synchrotron Radiation
authors J.M.Martin-Garcia, C.E.Conrad, G.Nelson, N.Stander, N.A.Zatsepin L.Zhu, J.Geiger, E.Chun, D.Kissick, M.C.Hilgart, C.Ogata, A.Ishch N.Nagaratnam, S.Roy-Chowdhury, J.Coe, G.Subramanian, A.Schaffer G.Ketawala, N.Venugopalan, S.Xu, S.Corcoran, D.Ferguson, U.Weier J.C.H.Spence, V.Cherezov, P.Fromme, R.F.Fischetti, W.Liu
compound source
Molecule: Adenosine Receptor A2a,Soluble Cytochrome B562,Ad Receptor A2a;
Chain: A
Synonym: Cytochrome B-562
Engineered: Yes
 Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Adora2a, Adora2, Cybc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 2 2 21
R_factor 0.241 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.300 180.300 142.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand CLR, OLA, OLC, ZMA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSerial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation., Martin-Garcia JM, Conrad CE, Nelson G, Stander N, Zatsepin NA, Zook J, Zhu L, Geiger J, Chun E, Kissick D, Hilgart MC, Ogata C, Ishchenko A, Nagaratnam N, Roy-Chowdhury S, Coe J, Subramanian G, Schaffer A, James D, Ketwala G, Venugopalan N, Xu S, Corcoran S, Ferguson D, Weierstall U, Spence JCH, Cherezov V, Fromme P, Fischetti RF, Liu W, IUCrJ. 2017 May 24;4(Pt 4):439-454. doi: 10.1107/S205225251700570X. eCollection, 2017 Jul 1. PMID:28875031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (5uvi.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 5UVI
  • CSU: Contacts of Structural Units for 5UVI
  • Structure Factors (253 Kb)
  • Retrieve 5UVI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UVI from S2C, [Save to disk]
  • Re-refined 5uvi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UVI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UVI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uvi_A] [5uvi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UVI
  • Community annotation for 5UVI at PDBWiki (http://pdbwiki.org)

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