5V18 Oxidoreductase Inhibitor date Mar 01, 2017
title Structure Of Phd2 In Complex With 1,2,4-Triazolo-[1,5-A]Pyri
authors R.J.Skene
compound source
Molecule: Egl Nine Homolog 1
Chain: A
Fragment: Unp Residues 80-315
Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2,Hph- Hydroxylase Domain-Containing Protein 2,Phd2,Sm-20;
Ec: 1.14.11.29
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egln1, C1orf12, Pnas-118, Pnas-137
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41
R_factor 0.191 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.528 72.528 45.642 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand 8UY, FE2, SO4 enzyme Oxidoreductase E.C.1.14.11.29 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (5v18.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 5V18
  • CSU: Contacts of Structural Units for 5V18
  • Structure Factors (351 Kb)
  • Retrieve 5V18 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V18 from S2C, [Save to disk]
  • Re-refined 5v18 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5V18 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5V18
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v18_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5V18
  • Community annotation for 5V18 at PDBWiki (http://pdbwiki.org)

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