OCA Atlas for 5V5S

5V5S

Membrane Protein

date

Mar 15, 2017

title

Multi-Drug Efflux; Membrane Transport; Rnd Superfamily; Drug Resistance

authors

Z.Wang, G.Fan, C.F.Hryc, J.N.Blaza, I.I.Serysheva, M.F.Schmid, W.C B.F.Luisi, D.Du

compound

source

Molecule: Outer Membrane Protein Tolc
Chain: A, B, C
Synonym: Multidrug Efflux Pump Subunit Tolc,Outer Membrane Tolc;
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Tolc, Cole1-I, Mtcb, Muka, Refi, Toc, Weea, B3035, Jw
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Multidrug Efflux Pump Subunit Acra
Chain: D, E, F, G, H, I
Synonym: Acrab-Tolc Multidrug Efflux Pump Subunit Acra,Acri Resistance Protein A;
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Acra, Z0578, Ecs0516
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Multidrug Efflux Pump Subunit Acrb
Chain: J, K, L
Synonym: Acrab-Tolc Multidrug Efflux Pump Subunit Acrb,Acri Resistance Protein B;
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Acrb, Acre, B0462, Jw0451
Expression_system: Escherichia Coli
Expression_system_taxid: 562

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

6.50 Å

ligand

MSE

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B, C
F, E, H, D, I, G
J, K, L

Primary reference

An allosteric transport mechanism for the AcrAB-TolC Multidrug Efflux Pump., Wang Z, Fan G, Hryc CF, Blaza JN, Serysheva II, Schmid MF, Chiu W, Luisi BF, Du D, Elife. 2017 Mar 29;6. pii: e24905. doi: 10.7554/eLife.24905. PMID:28355133

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (984 Kb) [Save to disk]

Biological Unit Coordinates (5v5s.pdb1.gz) 974 Kb

LPC: Ligand-Protein Contacts for 5V5S

CSU: Contacts of Structural Units for 5V5S

Retrieve 5V5S in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5V5S from S2C, [Save to disk]

View 5V5S in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5V5S

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5v5s] [5v5s_L] [5v5s_G] [5v5s_J] [5v5s_K] [5v5s_H] [5v5s_A] [5v5s_D] [5v5s_C] [5v5s_F] [5v5s_B] [5v5s_E] [5v5s_I]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5V5S

Community annotation for 5V5S at PDBWiki (http://pdbwiki.org)

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