5V5Z Oxidoreductase Oxidoreducatse Inhibitor date Mar 15, 2017
title Structure Of Cyp51 From The Pathogen Candida Albicans
authors M.V.Keniya, M.Sabherwal, R.K.Wilson, A.A.Sagatova, J.D.A.Tyndall
compound source
Molecule: Lanosterol 14-Alpha Demethylase
Chain: A
Synonym: Cypli,Cytochrome P450 51,Cytochrome P450-14dm,Cyto P450-Lia1,Sterol 14-Alpha Demethylase;
Ec: 1.14.13.70
Engineered: Yes
Organism_scientific: Candida Albicans (Strain Sc5314 Atcc 2876);
Organism_common: Yeast
Organism_taxid: 237561
Strain: Sc5314 Atcc Mya-2876
Gene: Erg11, Cyp51, Erg16, Caalfm_c500660ca, Cao19.922
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
Expression_system_strain: Addelta
symmetry Space Group: P 2 21 21
R_factor 0.219 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.940 92.510 101.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 1YN, HEM enzyme Oxidoreductase E.C.1.14.13.70 BRENDA
Gene CAALFM
Gene
Ontology
ChainFunctionProcessComponent
A
  • sterol 14-demethylase activi...


  • Primary referenceArchitecture of a single membrane spanning cytochrome P450 suggests constraints that orient the catalytic domain relative to a bilayer., Monk BC, Tomasiak TM, Keniya MV, Huschmann FU, Tyndall JD, O'Connell JD 3rd, Cannon RD, McDonald JG, Rodriguez A, Finer-Moore JS, Stroud RM, Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3865-70. doi:, 10.1073/pnas.1324245111. Epub 2014 Feb 3. PMID:24613931
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (5v5z.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 5V5Z
  • CSU: Contacts of Structural Units for 5V5Z
  • Structure Factors (556 Kb)
  • Retrieve 5V5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V5Z from S2C, [Save to disk]
  • Re-refined 5v5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5V5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V5Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v5z] [5v5z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V5Z
  • Community annotation for 5V5Z at PDBWiki (http://pdbwiki.org)

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