5V8K Photosynthesis date Mar 22, 2017
title Homodimeric Reaction Center Of H. Modesticaldum
authors C.Gisriel, I.Sarrou, B.Ferlez, J.Golbeck, K.E.Redding, R.Fromme
compound source
Molecule: P800 Reaction Center Core Protein
Chain: A
Fragment: Reaction Center Protein
Organism_scientific: Heliobacterium Modesticaldum
Organism_taxid: 35701

Molecule: Proteinsubunit Pshx
Chain: B
Fragment: Unp Residues 13-37

Organism_scientific: Heliobacterium Modesticaldum (Strain A Ice1);
Organism_taxid: 498761
Strain: Atcc 51547 Ice1
Atcc: 51547
symmetry Space Group: C 1 2 1
R_factor 0.158 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.358 89.714 111.637 90.00 108.15 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand AOH, C4D, CA, DGG, GB0, GBF, LMT, SF4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a symmetric photosynthetic reaction center-photosystem., Gisriel C, Sarrou I, Ferlez B, Golbeck JH, Redding KE, Fromme R, Science. 2017 Jul 27. pii: eaan5611. doi: 10.1126/science.aan5611. PMID:28751471
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (433 Kb) [Save to disk]
  • Biological Unit Coordinates (5v8k.pdb1.gz) 804 Kb
  • LPC: Ligand-Protein Contacts for 5V8K
  • CSU: Contacts of Structural Units for 5V8K
  • Structure Factors (3879 Kb)
  • Retrieve 5V8K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V8K from S2C, [Save to disk]
  • View 5V8K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V8K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v8k_B] [5v8k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V8K
  • Community annotation for 5V8K at PDBWiki (http://pdbwiki.org)

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