5VAL Transferase Transferase Inhibitor date Mar 27, 2017
title Braf In Complex With N-(3-(Tert-Butyl)Phenyl)-4-Methyl-3-(6- Morpholinopyrimidin-4-Yl)Benzamide
authors M.Mamo, B.A.Appleton
compound source
Molecule: Serinethreonine-Protein Kinase B-Raf
Chain: A, B
Fragment: Unp Residues 445-723
Synonym: Proto-Oncogene B-Raf,P94,V-Raf Murine Sarcoma Vira Homolog B1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Braf, Braf1, Rafb1
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 41 21 2
R_factor 0.181 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.121 94.121 163.537 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.26 Å
ligand 92D enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk]
  • Biological Unit Coordinates (5val.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (5val.pdb2.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5VAL
  • CSU: Contacts of Structural Units for 5VAL
  • Structure Factors (573 Kb)
  • Retrieve 5VAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VAL from S2C, [Save to disk]
  • Re-refined 5val structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5VAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VAL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5val_A] [5val_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VAL
  • Community annotation for 5VAL at PDBWiki (http://pdbwiki.org)

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