5VBL Membrane Protein date Mar 29, 2017
title Structure Of Apelin Receptor In Complex With Agonist Peptide
authors Y.Ma, Y.Yue, Y.Ma, Q.Zhang, Q.Zhou, Y.Song, Y.Shen, X.Li, X.Ma, C.Li, M.A.Hanson, G.W.Han, E.A.Sickmier, G.Swaminath, S.Zhao, R.C.Stev L.A.Hu, W.Zhong, M.Zhang, F.Xu
compound source
Molecule: Agonist Peptide
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Apelin Receptor,Rubredoxin,Apelin Receptor Chimer
Chain: B
Fragment: Unp Residues 7-229, Unp Residues 1-54, Unp Residu 330;
Synonym: Angiotensin Receptor-Like 1,G-Protein Coupled Rece G-Protein Coupled Receptor Hg11,Rd;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens, Clostridium Pasteurianum
Organism_common: Human
Organism_taxid: 9606, 1501
Gene: Aplnr, Agtrl1, Apj
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.239 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.580 44.300 79.450 90.00 114.87 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 200, ALC, HRG, NLE, OIC, OLC, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • electron transfer activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (5vbl.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 5VBL
  • CSU: Contacts of Structural Units for 5VBL
  • Structure Factors (475 Kb)
  • Retrieve 5VBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VBL from S2C, [Save to disk]
  • Re-refined 5vbl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5VBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vbl_B] [5vbl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VBL
  • Community annotation for 5VBL at PDBWiki (http://pdbwiki.org)

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